SMTL ID : 2zu2.1

complex structure of CoV 229E 3CL protease with EPDTC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 10 residues within 4Å: Chain A: F.139, I.140, N.141, A.143, C.144, H.162, Q.163, I.164, E.165 Chain B: A.1 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.139, A:E.165 Hydrogen bonds: A:N.141, A:H.162 Water bridges: B:A.1, B:A.1

2 x DTZ: zinc(II)hydrogensulfide(Non-covalent)

DTZ.2: 2 residues within 4Å: Chain A: H.41, C.144 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.41, A:C.144 DTZ.3: 2 residues within 4Å: Chain B: H.41, C.144 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.41, B:C.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.C. et al., Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds. J.Biol.Chem. (2009)

Release Date

2009-01-13

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase

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