SMTL ID : 2zu3.2 (1 other biounit)

Complex structure of CVB3 3C protease with TG-0204998

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x ZU3: N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl)amino]-L-alanyl-N-[(1R)-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}pentyl]-L-leucinamide(Covalent)

ZU3.1: 16 residues within 4Å: Chain A: H.40, E.71, L.125, N.126, L.127, G.128, T.142, R.143, A.144, G.145, C.147, H.161, V.162, G.163, G.164, N.165 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.40, A:L.125, A:L.127 Hydrogen bonds: A:G.128, A:T.142, A:G.145, A:V.162, A:G.164, A:N.165 Water bridges: A:T.142, A:R.143, A:C.147 ZU3.2: 16 residues within 4Å: Chain B: H.40, E.71, L.125, N.126, L.127, G.128, T.142, R.143, A.144, G.145, C.147, H.161, V.162, G.163, G.164, N.165 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:H.40, B:L.125, B:L.127 Hydrogen bonds: B:G.128, B:T.142, B:T.142, B:G.145, B:V.162, B:G.164, B:N.165 Water bridges: B:T.142, B:R.143, B:C.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.C. et al., Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds. J.Biol.Chem. (2009)

Release Date

2009-01-13

Peptides

3C proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C proteinase

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