SMTL ID : 2zwn.1

Crystal structure of the novel two-domain type laccase from a metagenome

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

6 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: P.56, H.57, C.105, V.107, H.112, M.118 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:C.105, A:H.112 CU.4: 5 residues within 4Å: Chain A: H.204, H.206 Chain C: H.60, H.62 Ligands: C2O.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C Metal complexes: A:H.204, C:H.60 CU.6: 5 residues within 4Å: Chain A: H.60, H.62 Chain B: H.204, H.206 Ligands: C2O.2 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.204, A:H.60, H2O.1 CU.7: 6 residues within 4Å: Chain B: P.56, H.57, C.105, V.107, H.112, M.118 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.57, B:C.105, B:H.112 CU.9: 5 residues within 4Å: Chain B: H.60, H.62 Chain C: H.204, H.206 Ligands: C2O.8 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.60, C:H.204, H2O.8 CU.10: 6 residues within 4Å: Chain C: P.56, H.57, C.105, V.107, H.112, M.118 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.57, C:C.105, C:H.112

3 x C2O: CU-O-CU LINKAGE(Non-covalent)

C2O.2: 11 residues within 4Å: Chain A: H.60, H.62, W.102, H.104, H.106 Chain B: H.204, H.206, I.250, H.252, H.254 Ligands: CU.6 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Metal complexes: B:H.206, B:H.252, B:H.254, A:H.62, A:H.104, A:H.106 C2O.3: 11 residues within 4Å: Chain A: H.204, H.206, I.250, H.252, H.254 Chain C: H.60, H.62, W.102, H.104, H.106 Ligands: CU.4 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain A Metal complexes: C:H.62, C:H.104, C:H.106, A:H.206, A:H.252, A:H.254 C2O.8: 11 residues within 4Å: Chain B: H.60, H.62, W.102, H.104, H.106 Chain C: H.204, H.206, I.250, H.252, H.254 Ligands: CU.9 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Metal complexes: B:H.62, B:H.104, B:H.106, C:H.206, C:H.252, C:H.254

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: K.184, K.185, Y.275, D.276, G.277 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komori, H. et al., X-ray structure of a two-domain type laccase: a missing link in the evolution of multi-copper proteins. Febs Lett. (2009)

Release Date

2009-04-07

Peptides

two-domain type laccase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

two-domain type laccase

Related Entries With Identical Sequence