SMTL ID : 2zx2.1

Rhamnose-binding lectin CSL3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: S.51, Q.52, S.53 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.52, A:S.53, A:S.53 Water bridges: A:S.51 Salt bridges: A:K.57 PO4.2: 7 residues within 4Å: Chain A: E.7, N.74, D.79, V.82, G.83, T.84, K.86 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.7, A:N.74, A:D.79, A:G.83 Salt bridges: A:K.86 PO4.4: 5 residues within 4Å: Chain B: I.2, R.24, R.30, D.89, K.91 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.30, B:D.89, B:D.89 Water bridges: B:R.30 Salt bridges: B:R.24 PO4.5: 4 residues within 4Å: Chain B: R.30, Q.31, Y.87, D.89 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.87, B:Y.87, B:D.89, B:D.89 Water bridges: B:N.26 Salt bridges: B:R.30

3 x RAM: alpha-L-rhamnopyranose(Non-covalent)

RAM.3: 10 residues within 4Å: Chain A: E.107, Q.143, N.174, D.179, C.181, V.182, G.183, T.184, Y.185, K.186 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.143 Hydrogen bonds: A:E.107, A:N.174, A:N.174, A:G.183, A:K.186 RAM.6: 9 residues within 4Å: Chain B: E.7, Q.43, N.74, D.79, V.82, G.83, T.84, Y.85, K.86 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Q.43 Hydrogen bonds: B:E.7, B:N.74, B:N.74, B:G.83, B:K.86 RAM.7: 9 residues within 4Å: Chain B: E.107, Q.143, N.174, D.179, V.182, G.183, T.184, Y.185, K.186 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Q.143 Hydrogen bonds: B:E.107, B:N.174, B:N.174, B:G.183, B:K.186 Water bridges: B:N.174, B:D.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shirai, T. et al., Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein. J.Mol.Biol. (2009)

Release Date

2009-06-30

Peptides

CSL3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CSL3

Related Entries With Identical Sequence