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SMTL ID : 2zyj.1
Crystal structure of LysN, alpha-aminoadipate aminotransferase (complexed with N-(5'-phosphopyridoxyl)-L-glutamate), from Thermus thermophilus HB27
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.67 Å
Oligo State
homo-dimer
Ligands
2 x
PGU
:
N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid
(Non-covalent)
PGU.1:
20 residues within 4Å:
Chain A:
I.22
,
R.23
,
G.39
,
G.40
,
G.99
,
S.100
,
Q.101
,
Y.125
,
I.169
,
N.174
,
D.202
,
A.204
,
Y.205
,
S.235
,
S.237
,
K.238
,
R.245
,
R.368
Chain B:
Y.70
,
L.268
19
PLIP interactions
:
17 interactions with chain A
,
2 interactions with chain B
Hydrophobic interactions:
A:I.22
,
A:I.169
,
A:Y.205
,
B:Y.70
Hydrogen bonds:
A:G.40
,
A:S.100
,
A:S.100
,
A:S.100
,
A:Q.101
,
A:N.174
,
A:S.235
,
A:S.237
,
A:K.238
,
B:Y.70
Salt bridges:
A:R.23
,
A:K.238
,
A:R.245
,
A:R.368
pi-Stacking:
A:Y.125
PGU.2:
21 residues within 4Å:
Chain A:
Y.70
,
L.268
Chain B:
I.22
,
R.23
,
L.26
,
G.39
,
G.40
,
G.99
,
S.100
,
Q.101
,
Y.125
,
I.169
,
N.174
,
D.202
,
A.204
,
Y.205
,
S.235
,
S.237
,
K.238
,
R.245
,
R.368
23
PLIP interactions
:
20 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:I.22
,
B:I.169
,
B:N.174
,
B:Y.205
,
A:Y.70
Hydrogen bonds:
B:G.40
,
B:S.100
,
B:S.100
,
B:S.100
,
B:Q.101
,
B:N.174
,
B:Y.205
,
B:S.235
,
B:S.237
,
B:K.238
,
B:K.238
,
A:Y.70
,
A:Y.70
Salt bridges:
B:R.23
,
B:K.238
,
B:R.245
,
B:R.368
pi-Stacking:
B:Y.125
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Ouchi, T. et al., Dual roles of a conserved pair, Arg23 and Ser20, in recognition of multiple substrates in alpha-aminoadipate aminotransferase from Thermus thermophilus. Biochem.Biophys.Res.Commun. (2009)
Release Date
2009-09-01
Peptides
Alpha-aminodipate aminotransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Alpha-aminodipate aminotransferase
Toggle Identical (AB)
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|
3cbf.1
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