SMTL ID : 2zz5.1

Orotidine Monophosphate Deacarboxylase D70A/K72A double mutant from M. thermoautotrophicum complexed with 6- cyano-UMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

2 x 6CN: 6-cyanouridine 5'-phosphate(Non-covalent)

6CN.1: 15 residues within 4Å: Chain A: A.21, D.23, K.45, I.99, M.129, S.130, P.183, V.185, Q.188, V.204, G.205, R.206 Chain B: D.78, I.79, T.82 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.23, A:K.45, A:S.130, A:S.130, A:S.130, A:V.185, A:Q.188, A:G.205, A:R.206, B:T.82, B:T.82 Water bridges: A:D.23, A:G.184, A:G.184, A:G.184, A:G.184, A:S.207 Salt bridges: A:R.206 6CN.2: 15 residues within 4Å: Chain A: D.78, I.79, T.82 Chain B: A.21, D.23, K.45, I.99, M.129, S.130, P.183, V.185, Q.188, V.204, G.205, R.206 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.23, B:K.45, B:S.130, B:S.130, B:S.130, B:V.185, B:Q.188, B:G.205, B:R.206, A:T.82 Water bridges: B:D.23, B:G.184, B:G.184, B:G.184, B:G.184, B:S.207 Salt bridges: B:R.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujihashi, M. et al., Structural characterization of the molecular events during a slow substrate-product transition in orotidine 5'-monophosphate decarboxylase. J.Mol.Biol. (2009)

Release Date

2009-03-24

Peptides

Orotidine 5'-phosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Orotidine 5'-phosphate decarboxylase