SMTL ID : 2zzd.1

Recombinant thiocyanate hydrolase, air-oxidized form of holo-enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-4-4-4-mer

Ligands

3 x FRU: beta-D-fructofuranose(Non-covalent)

FRU.1: 4 residues within 4Å: Chain B: H.10, L.13, G.14 Chain F: R.157 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:H.10, F:R.157, F:R.157 Water bridges: B:G.14, B:E.59, B:E.59 FRU.11: 5 residues within 4Å: Chain J: K.29, R.69, V.71 Chain L: E.83, D.84 14 PLIP interactions: 7 interactions with chain J, 7 interactions with chain L Hydrogen bonds: J:K.29, J:K.29, L:E.83, L:E.83 Water bridges: J:R.69, J:R.69, J:R.69, J:R.69, J:V.71, L:E.83, L:D.84, L:V.86, L:E.87, L:N.112 FRU.12: 6 residues within 4Å: Chain H: H.10, L.13, G.14 Chain K: G.52, A.54 Chain L: R.157 8 PLIP interactions: 2 interactions with chain L, 2 interactions with chain K, 4 interactions with chain H Hydrogen bonds: L:R.157, L:R.157, K:G.52, K:A.54, H:H.10, H:H.10 Water bridges: H:H.10, H:G.14

4 x 3CO: COBALT (III) ION(Non-covalent)

3CO.2: 4 residues within 4Å: Chain C: C.128, C.131, S.132, C.133 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.128, H2O.19 3CO.4: 4 residues within 4Å: Chain F: C.128, C.131, S.132, C.133 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:C.128, H2O.52 3CO.7: 4 residues within 4Å: Chain I: C.128, C.131, S.132, C.133 2 PLIP interactions: 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:C.128, H2O.84 3CO.9: 4 residues within 4Å: Chain L: C.128, C.131, S.132, C.133 2 PLIP interactions: 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:C.128, H2O.117

4 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.3: 2 residues within 4Å: Chain A: V.68 Chain C: R.177 6 PLIP interactions: 6 interactions with chain C Water bridges: C:Q.175, C:R.177, C:R.177, C:R.177, C:R.177 Salt bridges: C:R.177 TLA.5: 2 residues within 4Å: Chain D: V.68 Chain F: R.177 6 PLIP interactions: 6 interactions with chain F Water bridges: F:Q.175, F:R.177, F:R.177, F:R.177, F:R.177 Salt bridges: F:R.177 TLA.8: 2 residues within 4Å: Chain G: V.68 Chain I: R.177 6 PLIP interactions: 6 interactions with chain I Water bridges: I:Q.175, I:R.177, I:R.177, I:R.177, I:R.177 Salt bridges: I:R.177 TLA.10: 2 residues within 4Å: Chain J: V.68 Chain L: R.177 6 PLIP interactions: 6 interactions with chain L Water bridges: L:Q.175, L:R.177, L:R.177, L:R.177, L:R.177 Salt bridges: L:R.177

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.6: 1 residues within 4Å: Chain F: T.98 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arakawa, T. et al., Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification. J.Am.Chem.Soc. (2009)

Release Date

2009-10-13

Peptides

Thiocyanate hydrolase subunit alpha: ADGJ
Thiocyanate hydrolase subunit beta: BEHK
Thiocyanate hydrolase subunit gamma: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

Thiocyanate hydrolase subunit alpha

Thiocyanate hydrolase subunit beta

Thiocyanate hydrolase subunit gamma

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