SMTL ID : 2zzk.2 (1 other biounit)

Crystal structure of tRNA wybutosine synthesizing enzyme TYW4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 11 residues within 4Å: Chain A: N.32, S.33, S.34, Y.85, R.88, V.225, Y.229, Q.255, H.272, F.273, Y.343 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.273 Hydrogen bonds: A:S.34, A:S.34, A:S.34, A:Y.85, A:V.225 Salt bridges: A:R.88, A:H.272 CIT.2: 3 residues within 4Å: Chain A: K.484, I.524, F.525 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.484, A:F.525, A:F.525 Salt bridges: A:K.484, A:K.484

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suzuki, Y. et al., Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4. Nucleic Acids Res. (2009)

Release Date

2009-06-02

Peptides

Leucine carboxyl methyltransferase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Leucine carboxyl methyltransferase 2

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