SMTL ID : 3d26.1

Norwalk P domain A-trisaccharide complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GAL- FUC- NGA: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)]beta-D-galactopyranose

GAL-FUC-NGA.1: 6 residues within 4Å: Chain A: D.98, H.100, W.146, S.148, P.149, S.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.151, A:S.148, A:S.148 Water bridges: A:D.98, A:S.151 GAL-FUC-NGA.2: 7 residues within 4Å: Chain B: D.98, H.100, D.115, W.146, S.148, P.149, S.151 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.151, B:D.98, B:S.148, B:S.148 Water bridges: B:S.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bu, W. et al., Structural basis for the receptor binding specificity of Norwalk virus. J.Virol. (2008)

Release Date

2008-06-10

Peptides

58 kd capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

58 kd capsid protein