SMTL ID : 3hmy.1

Crystal structure of HCR/T complexed with GT2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SIA- SIA- SIA: N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid-(2-8)-N-acetyl-alpha-neuraminic acid

SIA-SIA-SIA.1: 12 residues within 4Å: Chain A: K.278, D.282, Y.283, D.349, G.350, N.351, I.359, R.361, Y.364, A.366, I.369, I.410 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.349, A:N.351, A:Y.364 Water bridges: A:K.348, A:D.349 Salt bridges: A:R.361

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.357, T.405, H.406, I.420, Y.425 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.405, A:H.406 Water bridges: A:D.357, A:D.357, A:D.357, A:T.405, A:Y.425

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: L.356, R.358, N.423 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.423 Water bridges: A:R.358, A:N.423 Salt bridges: A:R.358 SO4.4: 2 residues within 4Å: Chain A: K.273, N.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.288, A:N.288 Salt bridges: A:K.273 SO4.5: 8 residues within 4Å: Chain A: Y.315, L.371, Y.372, K.373, K.374, Y.393, D.394, D.395 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.315, A:K.373, A:K.374, A:D.394 Water bridges: A:K.373, A:K.373 Salt bridges: A:K.373 SO4.6: 3 residues within 4Å: Chain A: K.278, D.413, R.416 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.278, A:R.416

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C. et al., Gangliosides as high affinity receptors for tetanus neurotoxin. J.Biol.Chem. (2009)

Release Date

2009-07-14

Peptides

Tetanus toxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tetanus toxin

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