SMTL ID : 3lek.1

Lectin Domain of Lectinolysin complexed with Lewis B Antigen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NDG- GAL- FUC- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-fucopyranose-(1-4)]2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-GAL-FUC-FUC.1: 9 residues within 4Å: Chain A: Y.25, Y.41, G.42, H.48, F.51, R.75, D.77, G.78, R.83 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.41 Water bridges: A:G.42, A:Y.25

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: R.31, D.34, N.36, S.45, A.139, E.140 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.31, A:D.34, A:N.36, A:A.139, A:E.140

1 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 1 residues within 4Å: Chain A: H.43 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:H.43, H2O.4, H2O.4, H2O.5, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feil, S.C. et al., Structure of the lectin regulatory domain of the cholesterol-dependent cytolysin lectinolysin reveals the basis for its lewis antigen specificity. Structure (2012)

Release Date

2010-12-29

Peptides

Platelet aggregation factor Sm-hPAF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet aggregation factor Sm-hPAF

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