SMTL ID : 3sis.1 (1 other biounit)

Crystal structure of Porcine CRW-8 Rotavirus VP8* in complex with aceramido-GM3_Gc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MN0: methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid(Non-covalent)

MN0.1: 9 residues within 4Å: Chain A: R.40, S.83, H.94, G.95, N.117, G.126, Y.127, Y.128, S.129 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:R.40, A:R.40, A:S.83, A:S.83, A:H.94, A:N.117, A:Y.127, A:Y.127, A:S.129 Water bridges: A:G.95, A:G.126, A:Y.127

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: D.81, G.95, Y.104, T.115, Y.116, N.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.104, A:T.115, A:T.115 Water bridges: A:D.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, X. et al., Novel structural insights into rotavirus recognition of ganglioside glycan receptors. J.Mol.Biol. (2011)

Release Date

2011-09-28

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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