SMTL ID : 3wmv.1

The structure of an anti-cancer lectin mytilec with ligand from the mussel Mytilus galloprovincialis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

6 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Non-covalent)

A2G.1: 10 residues within 4Å: Chain A: E.78, H.111, P.112, K.113, G.114, G.115, V.126, H.128, D.130, H.132 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.78, A:P.112, A:G.114, A:D.130, A:H.132 Salt bridges: A:H.128 A2G.2: 11 residues within 4Å: Chain A: H.19, P.20, K.21, G.22, G.23, V.34, H.36, D.38, H.40, R.42, E.122 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:H.19, A:P.20, A:G.22, A:D.38, A:D.38, A:H.40, A:R.42, A:R.42 Salt bridges: A:H.36 A2G.3: 11 residues within 4Å: Chain A: D.30, H.67, P.68, L.69, G.70, G.71, V.82, H.84, D.86, H.88, R.90 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.67, A:P.68, A:G.70, A:D.86, A:H.88, A:R.90 Water bridges: A:D.30, A:D.86, A:H.88 Salt bridges: A:H.84 A2G.4: 11 residues within 4Å: Chain B: H.19, P.20, K.21, G.22, G.23, V.34, H.36, D.38, H.40, R.42, E.122 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.20, B:G.22, B:H.40, B:R.42 Water bridges: B:D.38 Salt bridges: B:H.36 A2G.5: 10 residues within 4Å: Chain B: D.30, H.67, P.68, L.69, G.70, G.71, V.82, H.84, D.86, H.88 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:P.68, B:G.70, B:H.88, B:R.90 Water bridges: B:D.30, B:D.86, B:H.88 Salt bridges: B:H.84 A2G.6: 10 residues within 4Å: Chain B: E.78, H.111, P.112, K.113, G.114, G.115, V.126, H.128, D.130, H.132 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.111, B:P.112, B:G.114, B:D.130, B:H.132 Water bridges: B:E.78, B:H.132 Salt bridges: B:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terada, D. et al., Crystal structure of MytiLec, a galactose-binding lectin from the mussel Mytilus galloprovincialis with cytotoxicity against certain cancer cell types. Sci Rep (2016)

Release Date

2014-12-03

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin

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