SMTL ID : 3a0i.1

Human glucokinase in complex with a synthetic activator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.1: 15 residues within 4Å: Chain A: S.141, F.142, P.143, T.158, K.159, N.194, D.195, T.196, I.215, G.219, C.220, N.221, E.246, Q.277, E.280 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.158, A:T.158, A:K.159, A:N.194, A:N.194, A:C.220, A:N.221, A:E.246, A:Q.277 Water bridges: A:K.159, A:D.195, A:D.195, A:G.219, A:C.220, A:E.246 Salt bridges: A:K.159

1 x AJI: 3-[(4-fluorophenyl)sulfanyl]-N-(4-methyl-1,3-thiazol-2-yl)-6-[(4-methyl-4H-1,2,4-triazol-3-yl)sulfanyl]pyridine-2-carboxamide(Non-covalent)

AJI.2: 19 residues within 4Å: Chain A: Y.51, V.52, R.53, S.54, P.56, G.87, Q.88, I.149, M.200, I.201, Y.204, Y.205, H.208, C.210, E.211, M.225, L.441, V.442, V.445 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.56, A:I.201, A:I.201, A:L.441 Hydrogen bonds: A:R.53, A:R.53 pi-Stacking: A:Y.204, A:Y.204, A:Y.204

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: M.228, V.231, V.234, G.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mitsuya, M. et al., Discovery of novel 3,6-disubstituted 2-pyridinecarboxamide derivatives as GK activators. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-04-28

Peptides

Glucokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

Glucokinase

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