- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-10-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 10 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
CAP.2: 23 residues within 4Å:- Chain A: V.161, K.163, K.165, K.189, D.191, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, L.390, G.391, G.392
- Chain H: E.49, T.54, W.55, N.111
- Ligands: MG.1
24 PLIP interactions:22 interactions with chain A, 2 interactions with chain H- Hydrogen bonds: A:K.163, A:S.367, A:G.369, A:Q.389, A:G.391, A:G.392, H:N.111
- Water bridges: A:K.165, A:K.165, A:R.282, A:R.282, A:H.285, A:K.322, A:S.367, A:L.370, A:G.393, H:T.54
- Salt bridges: A:K.163, A:K.163, A:K.165, A:R.282, A:H.314, A:K.322, A:K.322
CAP.4: 21 residues within 4Å:- Chain B: V.161, K.163, K.165, K.189, D.191, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, G.391, G.392
- Chain G: E.49, W.55, N.111
- Ligands: MG.3
22 PLIP interactions:20 interactions with chain B, 2 interactions with chain G- Hydrogen bonds: B:K.163, B:S.367, B:G.369, B:Q.389, B:G.391, B:G.392, G:N.111
- Water bridges: B:K.165, B:K.165, B:R.282, B:G.316, B:K.322, B:G.368, B:G.368, G:W.55
- Salt bridges: B:K.163, B:K.163, B:K.165, B:R.282, B:H.314, B:K.322, B:K.322
CAP.6: 20 residues within 4Å:- Chain C: V.161, K.163, K.165, K.189, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, G.391, G.392
- Chain F: E.49, W.55, N.111
- Ligands: MG.5
17 PLIP interactions:16 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:K.163, C:S.367, C:G.369, C:G.391, C:G.392, F:N.111
- Water bridges: C:R.282, C:R.282, C:S.367, C:S.367
- Salt bridges: C:K.163, C:K.163, C:K.165, C:R.282, C:H.314, C:K.322, C:K.322
CAP.8: 22 residues within 4Å:- Chain D: V.161, K.163, K.165, K.189, D.191, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, G.391, G.392
- Chain J: E.49, T.54, W.55, N.111
- Ligands: MG.7
27 PLIP interactions:25 interactions with chain D, 2 interactions with chain J- Hydrogen bonds: D:K.163, D:G.369, D:Q.389, D:G.391, D:G.392, J:T.54, J:N.111
- Water bridges: D:K.165, D:K.165, D:H.281, D:R.282, D:R.282, D:R.282, D:H.285, D:H.314, D:G.316, D:S.367, D:L.370, D:L.370, D:G.393
- Salt bridges: D:K.163, D:K.163, D:K.165, D:R.282, D:H.314, D:K.322, D:K.322
CAP.10: 16 residues within 4Å:- Chain E: K.163, K.189, E.192, H.281, R.282, H.314, S.367, G.368, G.369, Q.389, L.390, G.391, G.392
- Chain I: W.55, N.111
- Ligands: CA.9
22 PLIP interactions:20 interactions with chain E, 2 interactions with chain I- Hydrogen bonds: E:K.163, E:S.367, E:S.367, E:G.369, E:Q.389, E:G.391, E:G.392, I:N.111
- Water bridges: E:H.281, E:R.282, E:R.282, E:R.282, E:H.314, E:S.367, E:S.367, E:G.368, E:L.370, I:W.55
- Salt bridges: E:H.281, E:R.282, E:H.314, E:H.314
CAP.12: 23 residues within 4Å:- Chain C: E.49, T.54, W.55, N.111
- Chain F: V.161, K.163, K.165, K.189, D.191, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, L.390, G.391, G.392
- Ligands: MG.11
24 PLIP interactions:22 interactions with chain F, 2 interactions with chain C- Hydrogen bonds: F:K.163, F:S.367, F:G.369, F:Q.389, F:G.391, F:G.392, C:N.111
- Water bridges: F:K.165, F:K.165, F:R.282, F:R.282, F:H.285, F:K.322, F:S.367, F:L.370, F:G.393, C:T.54
- Salt bridges: F:K.163, F:K.163, F:K.165, F:R.282, F:H.314, F:K.322, F:K.322
CAP.14: 21 residues within 4Å:- Chain B: E.49, W.55, N.111
- Chain G: V.161, K.163, K.165, K.189, D.191, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, G.391, G.392
- Ligands: MG.13
22 PLIP interactions:20 interactions with chain G, 2 interactions with chain B- Hydrogen bonds: G:K.163, G:S.367, G:G.369, G:Q.389, G:G.391, G:G.392, B:N.111
- Water bridges: G:K.165, G:K.165, G:R.282, G:G.316, G:K.322, G:G.368, G:G.368, B:W.55
- Salt bridges: G:K.163, G:K.163, G:K.165, G:R.282, G:H.314, G:K.322, G:K.322
CAP.16: 20 residues within 4Å:- Chain A: E.49, W.55, N.111
- Chain H: V.161, K.163, K.165, K.189, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, G.391, G.392
- Ligands: MG.15
18 PLIP interactions:17 interactions with chain H, 1 interactions with chain A- Hydrogen bonds: H:K.163, H:E.192, H:S.367, H:G.369, H:G.391, H:G.392, A:N.111
- Water bridges: H:R.282, H:R.282, H:S.367, H:S.367
- Salt bridges: H:K.163, H:K.163, H:K.165, H:R.282, H:H.314, H:K.322, H:K.322
CAP.18: 22 residues within 4Å:- Chain E: E.49, T.54, W.55, N.111
- Chain I: V.161, K.163, K.165, K.189, D.191, E.192, H.281, R.282, H.314, K.322, L.323, S.367, G.368, G.369, Q.389, G.391, G.392
- Ligands: MG.17
27 PLIP interactions:25 interactions with chain I, 2 interactions with chain E- Hydrogen bonds: I:K.163, I:G.369, I:Q.389, I:G.391, I:G.392, E:T.54, E:N.111
- Water bridges: I:K.165, I:K.165, I:H.281, I:R.282, I:R.282, I:R.282, I:H.285, I:H.314, I:G.316, I:S.367, I:L.370, I:L.370, I:G.393
- Salt bridges: I:K.163, I:K.163, I:K.165, I:R.282, I:H.314, I:K.322, I:K.322
CAP.20: 16 residues within 4Å:- Chain D: W.55, N.111
- Chain J: K.163, K.189, E.192, H.281, R.282, H.314, S.367, G.368, G.369, Q.389, L.390, G.391, G.392
- Ligands: CA.19
22 PLIP interactions:20 interactions with chain J, 2 interactions with chain D- Hydrogen bonds: J:K.163, J:S.367, J:S.367, J:G.369, J:Q.389, J:G.391, J:G.392, D:N.111
- Water bridges: J:H.281, J:R.282, J:R.282, J:R.282, J:H.314, J:S.367, J:S.367, J:G.368, J:L.370, D:W.55
- Salt bridges: J:H.281, J:R.282, J:H.314, J:H.314
- 2 x CA: CALCIUM ION(Non-covalent)
CA.9: 6 residues within 4Å:- Chain E: K.163, K.189, D.191, E.192
- Chain I: N.111
- Ligands: CAP.10
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.191, E:E.192, H2O.37
CA.19: 6 residues within 4Å:- Chain D: N.111
- Chain J: K.163, K.189, D.191, E.192
- Ligands: CAP.20
3 PLIP interactions:2 interactions with chain J, 1 Ligand-Water interactions- Metal complexes: J:D.191, J:E.192, H2O.74
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishitani, Y. et al., Structure-based optimization of a Type III Rubisco from a hyperthermophile. To be Published
- Release Date
- 2010-04-07
- Peptides
- Ribulose bisphosphate carboxylase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
GC
HD
IE
JF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-10-mer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 10 x CAP: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nishitani, Y. et al., Structure-based optimization of a Type III Rubisco from a hyperthermophile. To be Published
- Release Date
- 2010-04-07
- Peptides
- Ribulose bisphosphate carboxylase: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
GC
HD
IE
JF
FG
GH
HI
IJ
J