SMTL ID : 3a1a.1

Crystal Structure of the DNMT3A ADD domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.24, C.27, C.44, C.47 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.24, A:C.27, A:C.44, A:C.47 ZN.2: 4 residues within 4Å: Chain A: C.67, C.70, C.89, C.92 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:C.89, A:C.92 ZN.3: 4 residues within 4Å: Chain A: C.79, C.84, C.113, C.116 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.79, A:C.84, A:C.113, A:C.116

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: F.51, C.54, A.55, Y.66, C.67, T.68, C.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.51, A:Y.66 Water bridges: A:Y.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Otani, J. et al., Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain. Embo Rep. (2009)

Release Date

2009-11-10

Peptides

DNA (cytosine-5)-methyltransferase 3A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA (cytosine-5)-methyltransferase 3A

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