SMTL ID : 3a1n.1

Crystal structure of L-Threonine dehydrogenase from Hyperthermophilic Archaeon Thermoplasma volcanium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 26 residues within 4Å: Chain A: G.6, S.8, G.9, Q.10, I.11, G.12, D.32, I.33, V.34, L.46, D.47, V.48, L.69, A.70, G.71, I.72, L.73, V.87, P.110, S.111, T.112, Y.137, K.141, Y.164, P.165, T.179 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.164 Hydrogen bonds: A:S.8, A:S.8, A:Q.10, A:Q.10, A:I.11, A:G.12, A:I.33, A:D.47, A:V.48, A:L.69, A:G.71, A:Y.137, A:K.141, A:I.167, A:T.179 Water bridges: A:G.6, A:G.9, A:S.49, A:L.73 NAD.2: 21 residues within 4Å: Chain B: G.6, S.8, G.9, Q.10, I.11, D.32, I.33, L.46, D.47, V.48, L.69, A.70, G.71, L.73, P.110, S.111, T.112, Y.137, K.141, Y.164, T.179 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.164 Hydrogen bonds: B:G.6, B:S.8, B:S.8, B:Q.10, B:Q.10, B:I.11, B:G.12, B:I.33, B:D.47, B:D.47, B:V.48, B:L.69, B:G.71, B:K.141 Water bridges: B:G.9, B:I.72, B:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoneda, K. et al., Crystal Structure of Binary and Ternary Complexes of Archaeal UDP-galactose 4-Epimerase-like L-Threonine Dehydrogenase from Thermoplasma volcanium. J.Biol.Chem. (2012)

Release Date

2010-03-31

Peptides

NDP-sugar epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NDP-sugar epimerase

Related Entries With Identical Sequence