SMTL ID : 3a1z.3 (3 other biounits)

Crystal structure of juvenile hormone binding protein from silkworm

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.38, W.40, H.208 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.38, A:D.38, A:H.208 ZN.2: 2 residues within 4Å: Chain A: D.137, H.143 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.137, A:H.143, H2O.2 ZN.3: 2 residues within 4Å: Chain A: H.98, D.121 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.98, A:D.121, A:D.121, H2O.1, H2O.2 ZN.4: 2 residues within 4Å: Chain A: D.96, D.121 No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain A: E.24, Q.76 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.24, H2O.2 ZN.6: 1 residues within 4Å: Chain A: D.138 No protein-ligand interaction detected (PLIP)

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.7: 5 residues within 4Å: Chain A: V.89, Y.130, Y.132, F.144, F.222 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.132, A:F.144, A:F.222 Hydrogen bonds: A:Y.130, A:Y.130 MPD.8: 6 residues within 4Å: Chain A: Y.118, I.161, L.163, L.190, R.191, A.194 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.163, A:L.190, A:A.194 Hydrogen bonds: A:Y.118 Water bridges: A:R.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujimoto, Z. et al., Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP. Plos One (2013)

Release Date

2010-04-28

Peptides

Hemolymph juvenile hormone binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Hemolymph juvenile hormone binding protein

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