- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 2 x GAL: beta-D-galactopyranose(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 11 residues within 4Å:- Chain A: Q.436, T.437, D.501, I.502, Y.503, N.504, E.514, W.516, N.519, N.523, Q.524
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:T.437, A:T.437, A:T.437, A:D.501, A:N.504, A:E.514, A:N.519, A:N.523, A:Q.524
- Water bridges: A:N.505
GOL.4: 10 residues within 4Å:- Chain A: D.543, A.544, Y.545, N.546, L.547, W.558, N.561, Q.563, N.565, Q.566
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:D.543, A:N.546, A:N.561, A:Q.563, A:N.565, A:Q.566
GOL.5: 7 residues within 4Å:- Chain A: A.304, E.305, D.306, T.307, L.310, I.337, T.338
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:D.306, A:T.307, A:T.307, A:T.307, A:T.338, A:T.338, A:T.338
- Water bridges: A:R.340
GOL.6: 10 residues within 4Å:- Chain A: K.302, E.305, T.308, T.529, R.531, E.533, V.535, G.538, C.560
- Ligands: GOL.8
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.302, A:T.308, A:R.531, A:G.538
- Water bridges: A:K.302, A:Q.311
GOL.7: 6 residues within 4Å:- Chain A: D.27, Y.28, S.29, A.73, E.74, P.76
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.27, A:Y.28, A:S.29
- Water bridges: A:S.29, A:S.29
GOL.8: 6 residues within 4Å:- Chain A: Q.311, R.330, N.539, D.559, C.560
- Ligands: GOL.6
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.311, A:R.330, A:C.560
- Water bridges: A:E.305, A:E.305, A:G.538
GOL.9: 3 residues within 4Å:- Chain A: S.212, M.213, T.214
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:M.213, A:T.214, A:T.214
- Water bridges: A:P.211, A:S.212, A:T.214, A:Q.251
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.12: 3 residues within 4Å:- Chain A: R.427, G.471, G.472
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.472
- Water bridges: A:R.427
- Salt bridges: A:R.427
SO4.13: 3 residues within 4Å:- Chain A: T.276, S.277, E.278
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.277, A:E.278
- Water bridges: A:T.276
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ichinose, H. et al., A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27. J.Biol.Chem. (2009)
- Release Date
- 2009-07-14
- Peptides
- Putative secreted alpha-galactosidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- monomer
- Ligands
- 2 x GAL: beta-D-galactopyranose(Non-covalent)
- 7 x GOL: GLYCEROL(Non-functional Binders)
- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ichinose, H. et al., A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27. J.Biol.Chem. (2009)
- Release Date
- 2009-07-14
- Peptides
- Putative secreted alpha-galactosidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B