SMTL ID : 3a2m.1

CRYSTAL STRUCTURE OF DBJA (WILD TYPE Type I)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

3 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 8 residues within 4Å: Chain A: P.30, V.55, A.299, E.302, A.303 Chain B: R.269, C.270, A.271 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.55, B:C.270, B:R.269 Water bridges: A:A.299, B:R.269, B:C.270, B:L.272 GLC-FRU.2: 14 residues within 4Å: Chain A: E.261, A.264, A.265, C.270, A.271, L.272, R.274 Chain B: A.26, D.28, A.29, P.54, V.55 Ligands: GLC-FRU.3, GLC-FRU.3 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.261, A:A.264, A:L.272, A:R.274, B:P.54, B:D.28, B:P.54 Water bridges: A:C.270, A:R.274 GLC-FRU.3: 10 residues within 4Å: Chain A: R.269, C.270, A.271 Chain B: P.30, V.55, A.299, E.302, A.303 Ligands: GLC-FRU.2, GLC-FRU.2 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:A.299, A:R.269, A:C.270 Hydrogen bonds: A:C.270, B:E.302, A:R.269

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: N.38, W.104, F.176, F.213, P.214 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: N.38, W.104, F.176, F.213, P.214 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prokop, Z. et al., Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering. Angew.Chem.Int.Ed.Engl. (2010)

Release Date

2010-05-26

Peptides

Haloalkane dehalogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Haloalkane dehalogenase

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