SMTL ID : 3a2x.1

Peroxiredoxin (C50S) from Aeropyrum pernix K1 (acetate-bound form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-10-mer

Ligands

10 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: T.46, P.47, V.48, S.49, R.125 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.46, A:V.48, A:S.49, A:S.49 Salt bridges: A:R.125 ACT.2: 5 residues within 4Å: Chain B: T.46, P.47, V.48, S.49, R.125 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.46, B:V.48, B:S.49 Salt bridges: B:R.125 ACT.3: 6 residues within 4Å: Chain C: P.42, T.46, P.47, V.48, S.49, R.125 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:P.42 Hydrogen bonds: C:V.48, C:S.49, C:S.49 Salt bridges: C:R.125 ACT.4: 6 residues within 4Å: Chain D: P.42, T.46, P.47, V.48, S.49, R.125 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:P.42 Hydrogen bonds: D:V.48, D:S.49, D:S.49 Salt bridges: D:R.125 ACT.5: 7 residues within 4Å: Chain E: P.42, T.46, P.47, V.48, S.49, R.125, M.144 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:P.42 Hydrogen bonds: E:V.48, E:S.49, E:S.49 Salt bridges: E:R.125 ACT.6: 6 residues within 4Å: Chain F: P.42, T.46, P.47, V.48, S.49, R.125 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:P.42 Hydrogen bonds: F:V.48, F:S.49 Salt bridges: F:R.125 ACT.7: 6 residues within 4Å: Chain G: P.42, T.46, P.47, V.48, S.49, R.125 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:P.42 Hydrogen bonds: G:T.46, G:V.48, G:S.49, G:S.49 Salt bridges: G:R.125 ACT.8: 6 residues within 4Å: Chain H: T.46, P.47, V.48, S.49, R.125, M.144 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:T.46, H:V.48, H:S.49 Salt bridges: H:R.125 ACT.9: 6 residues within 4Å: Chain I: P.42, T.46, P.47, V.48, S.49, R.125 6 PLIP interactions: 6 interactions with chain I Hydrophobic interactions: I:P.42 Hydrogen bonds: I:T.46, I:V.48, I:S.49, I:S.49 Salt bridges: I:R.125 ACT.10: 6 residues within 4Å: Chain J: P.42, T.46, P.47, V.48, S.49, R.125 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:P.42 Hydrogen bonds: J:T.46, J:V.48, J:S.49 Salt bridges: J:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide. J.Biochem. (2010)

Release Date

2009-10-27

Peptides

Probable peroxiredoxin: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Probable peroxiredoxin

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