SMTL ID : 3a42.1

Crystal structure of MvNei1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: K.16, Y.17, K.231 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.16, A:K.16, A:Y.17, A:K.231 GOL.2: 4 residues within 4Å: Chain A: N.123, S.124, E.125, K.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.125, A:E.125, A:E.125 GOL.3: 3 residues within 4Å: Chain A: N.201, Y.204, W.205 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.201

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: W.79, K.120, R.130, K.131 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.120, A:R.130, A:K.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imamura, K. et al., Structural Characterization of a Viral NEIL1 Ortholog Unliganded and Bound to Abasic Site-containing DNA. J.Biol.Chem. (2009)

Release Date

2009-07-21

Peptides

Formamidopyrimidine-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Formamidopyrimidine-DNA glycosylase