SMTL ID : 3a4h.1

Structure of cytochrome P450 vdh from Pseudonocardia autotrophica (orthorhombic crystal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.06 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 29 residues within 4Å: Chain A: F.58, K.65, M.87, I.88, H.95, R.99, F.106, L.233, A.236, G.237, T.240, T.241, L.277, P.282, V.283, P.287, R.289, L.312, F.339, F.340, G.341, I.344, H.345, F.346, C.347, L.348, G.349, A.353, E.356 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.106, A:L.233, A:A.236, A:L.277, A:P.282, A:L.312, A:F.340, A:L.348, A:A.353 Salt bridges: A:K.65, A:H.95, A:R.99, A:R.289, A:H.345, A:H.345 pi-Stacking: A:F.340 Metal complexes: A:C.347

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: D.160 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasutake, Y. et al., Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase. J.Biol.Chem. (2010)

Release Date

2010-07-14

Peptides

Vitamin D hydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D hydroxylase

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