SMTL ID : 3a4u.1

Crystal structure of MCFD2 in complex with carbohydrate recognition domain of ERGIC-53

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.122, F.124, N.126, D.151 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.122, A:D.122, A:F.124, A:D.151, H2O.1 CA.2: 5 residues within 4Å: Chain A: D.125, D.127, N.131, N.132, D.151 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.125, A:D.127, A:D.151, H2O.1, H2O.2 CA.6: 5 residues within 4Å: Chain B: D.78, D.80, N.82, L.84, E.89 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.78, B:D.80, B:L.84, B:E.89, H2O.7 CA.7: 4 residues within 4Å: Chain B: D.126, N.128, D.130, Y.132 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.126, B:D.130, B:Y.132, H2O.6, H2O.7

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: K.23, G.24, P.25, H.26, L.27 Chain B: Y.79, L.88, T.92 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.24, A:H.26 Water bridges: A:K.23, A:K.23, A:K.23, A:G.24 GOL.4: 5 residues within 4Å: Chain A: S.55, L.56, K.57, G.222, A.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.57, A:G.222 Water bridges: A:S.55, A:S.55, A:A.224 GOL.5: 8 residues within 4Å: Chain A: F.71, E.72, W.74, Y.97, Y.177, I.208, P.209, A.210 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.97, A:Y.177 Water bridges: A:E.72, A:Y.97, A:N.180 GOL.8: 5 residues within 4Å: Chain A: K.66, T.67 Chain B: E.111, D.112, I.115 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishio, M. et al., Structural basis for the cooperative interplay between the two causative gene products of combined factor V and factor VIII deficiency. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-01-05

Peptides

Protein ERGIC-53: A
Multiple coagulation factor deficiency protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein ERGIC-53

Multiple coagulation factor deficiency protein 2

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