- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 1 residues within 4Å:- Chain A: N.276
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 1 residues within 4Å:- Chain B: N.276
No protein-ligand interaction detected (PLIP)NAG-NAG.18: 1 residues within 4Å:- Chain C: N.276
No protein-ligand interaction detected (PLIP)NAG-NAG.26: 1 residues within 4Å:- Chain D: N.276
No protein-ligand interaction detected (PLIP)- 4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
NAG-NAG-BMA.3: 6 residues within 4Å:- Chain A: S.357, I.358, E.359, N.371, M.391, D.392
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.392, A:D.392
NAG-NAG-BMA.11: 6 residues within 4Å:- Chain B: S.357, I.358, E.359, N.371, M.391, D.392
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.392, B:D.392
NAG-NAG-BMA.19: 6 residues within 4Å:- Chain C: S.357, I.358, E.359, N.371, M.391, D.392
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.392, C:D.392
NAG-NAG-BMA.27: 6 residues within 4Å:- Chain D: S.357, I.358, E.359, N.371, M.391, D.392
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.392, D:D.392
- 16 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)
1PG.4: 11 residues within 4Å:- Chain A: E.289, A.292, D.296, L.318, A.319, N.320, T.322, R.361, L.363, K.389, M.391
Ligand excluded by PLIP1PG.5: 7 residues within 4Å:- Chain A: N.279, K.282, E.283, M.286, N.287, W.364, Q.366
Ligand excluded by PLIP1PG.6: 4 residues within 4Å:- Chain A: K.63, G.109, Y.110, I.113
Ligand excluded by PLIP1PG.7: 4 residues within 4Å:- Chain A: N.317, Y.347, N.348
- Chain D: R.214
Ligand excluded by PLIP1PG.12: 11 residues within 4Å:- Chain B: E.289, A.292, D.296, L.318, A.319, N.320, T.322, R.361, L.363, K.389, M.391
Ligand excluded by PLIP1PG.13: 7 residues within 4Å:- Chain B: N.279, K.282, E.283, M.286, N.287, W.364, Q.366
Ligand excluded by PLIP1PG.14: 4 residues within 4Å:- Chain B: K.63, G.109, Y.110, I.113
Ligand excluded by PLIP1PG.15: 4 residues within 4Å:- Chain B: N.317, Y.347, N.348
- Chain C: R.214
Ligand excluded by PLIP1PG.20: 11 residues within 4Å:- Chain C: E.289, A.292, D.296, L.318, A.319, N.320, T.322, R.361, L.363, K.389, M.391
Ligand excluded by PLIP1PG.21: 7 residues within 4Å:- Chain C: N.279, K.282, E.283, M.286, N.287, W.364, Q.366
Ligand excluded by PLIP1PG.22: 4 residues within 4Å:- Chain C: K.63, G.109, Y.110, I.113
Ligand excluded by PLIP1PG.23: 4 residues within 4Å:- Chain A: R.214
- Chain C: N.317, Y.347, N.348
Ligand excluded by PLIP1PG.28: 11 residues within 4Å:- Chain D: E.289, A.292, D.296, L.318, A.319, N.320, T.322, R.361, L.363, K.389, M.391
Ligand excluded by PLIP1PG.29: 7 residues within 4Å:- Chain D: N.279, K.282, E.283, M.286, N.287, W.364, Q.366
Ligand excluded by PLIP1PG.30: 4 residues within 4Å:- Chain D: K.63, G.109, Y.110, I.113
Ligand excluded by PLIP1PG.31: 4 residues within 4Å:- Chain B: R.214
- Chain D: N.317, Y.347, N.348
Ligand excluded by PLIP- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.8: 8 residues within 4Å:- Chain A: W.16, D.51, D.52, Y.93, C.101, G.102, K.127, D.129
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:W.16, A:D.52, A:D.52, A:K.127, A:D.129
- Water bridges: A:D.189
TRS.16: 8 residues within 4Å:- Chain B: W.16, D.51, D.52, Y.93, C.101, G.102, K.127, D.129
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.16, B:D.52, B:D.52, B:K.127, B:D.129
- Water bridges: B:D.189
TRS.24: 8 residues within 4Å:- Chain C: W.16, D.51, D.52, Y.93, C.101, G.102, K.127, D.129
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:W.16, C:D.52, C:D.52, C:K.127, C:D.129
- Water bridges: C:D.189
TRS.32: 8 residues within 4Å:- Chain D: W.16, D.51, D.52, Y.93, C.101, G.102, K.127, D.129
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:W.16, D:D.52, D:D.52, D:K.127, D:D.129
- Water bridges: D:D.189
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fujimoto, Z. et al., The Tetramer Structure of the Glycoside Hydrolase Family 27 alpha-Galactosidase I from Umbelopsis vinacea. Biosci.Biotechnol.Biochem. (2009)
- Release Date
- 2009-08-25
- Peptides
- Alpha-galactosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 16 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)
- 4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fujimoto, Z. et al., The Tetramer Structure of the Glycoside Hydrolase Family 27 alpha-Galactosidase I from Umbelopsis vinacea. Biosci.Biotechnol.Biochem. (2009)
- Release Date
- 2009-08-25
- Peptides
- Alpha-galactosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A