SMTL ID : 3a5y.2 (1 other biounit)

Crystal structure of GenX from Escherichia coli in complex with lysyladenylate analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x KAA: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE(Non-covalent)

KAA.1: 21 residues within 4Å: Chain A: E.98, R.120, E.122, Y.127, H.128, N.129, F.132, M.134, Y.138, E.264, L.265, A.266, N.267, F.269, E.271, G.316, V.317, A.318, G.320, R.323, L.334 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.269 Hydrogen bonds: A:E.98, A:R.120, A:R.120, A:E.122, A:E.122, A:N.129, A:Y.138, A:Y.138, A:E.264, A:N.267, A:G.320, A:R.323 Water bridges: A:S.96, A:E.98, A:S.241 Salt bridges: A:R.120 pi-Stacking: A:F.132, A:F.132 pi-Cation interactions: A:R.323 KAA.2: 21 residues within 4Å: Chain B: S.96, E.98, R.120, E.122, Y.127, H.128, N.129, F.132, M.134, Y.138, E.264, L.265, A.266, N.267, F.269, E.271, G.316, A.318, G.320, R.323, L.334 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.269, B:A.318 Hydrogen bonds: B:S.96, B:E.98, B:R.120, B:R.120, B:E.122, B:N.129, B:Y.138, B:E.264, B:N.267, B:G.320, B:R.323 Water bridges: B:D.322 Salt bridges: B:R.120 pi-Stacking: B:F.132, B:F.132 pi-Cation interactions: B:R.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yanagisawa, T. et al., A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-08-25

Peptides

Putative lysyl-tRNA synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Putative lysyl-tRNA synthetase

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