SMTL ID : 3a5z.2 (1 other biounit)

Crystal structure of Escherichia coli GenX in complex with elongation factor P

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x KAA: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE(Non-covalent)

KAA.1: 21 residues within 4Å: Chain A: E.81, R.103, E.106, Y.110, H.111, N.112, F.115, M.117, Y.121, E.247, L.248, A.249, N.250, F.252, E.254, G.299, A.301, G.303, R.306, L.317 Chain B: G.36 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.252, A:A.301 Hydrogen bonds: A:E.81, A:R.103, A:R.103, A:E.106, A:E.106, A:N.112, A:Y.121, A:Y.121, A:E.247, A:E.247, A:E.247, A:N.250, A:G.303, A:R.306 Salt bridges: A:R.103 pi-Stacking: A:F.115, A:F.115 KAA.2: 21 residues within 4Å: Chain C: E.81, R.103, E.106, Y.110, H.111, N.112, F.115, M.117, E.119, Y.121, E.240, E.247, L.248, N.250, F.252, E.254, G.299, A.301, G.303, R.306 Chain D: G.36 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:F.252 Hydrogen bonds: C:S.79, C:S.79, C:E.81, C:R.103, C:R.103, C:E.106, C:E.106, C:N.112, C:E.247, C:N.250, C:E.254, C:G.303, C:R.306 Salt bridges: C:R.103 pi-Stacking: C:F.115, C:F.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yanagisawa, T. et al., A paralog of lysyl-tRNA synthetase aminoacylates a conserved lysine residue in translation elongation factor P. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-08-25

Peptides

Putative lysyl-tRNA synthetase: AC
Elongation factor P: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
G

B
F

D
H

Putative lysyl-tRNA synthetase

Elongation factor P

Related Entries With Identical Sequence