- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.2: 7 residues within 4Å:- Chain A: R.99, G.101
- Chain B: Y.13, P.30, R.33, W.34, H.38
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Water bridges: A:R.99, A:R.99
- Salt bridges: A:R.99, B:H.38
MES.3: 6 residues within 4Å:- Chain A: Q.69, L.70, P.71, D.72, R.76, D.384
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.72
- Water bridges: A:R.387
- Salt bridges: A:R.76, A:D.384
MES.9: 7 residues within 4Å:- Chain A: Y.13, P.30, R.33, W.34, H.38
- Chain B: R.99, G.101
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Water bridges: B:R.99, B:R.99
- Salt bridges: B:R.99, A:H.38
MES.10: 6 residues within 4Å:- Chain B: Q.69, L.70, P.71, D.72, R.76, D.384
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.72, B:D.72
- Water bridges: B:D.384
- Salt bridges: B:R.76, B:D.384
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain A: D.106, R.107, R.251
- Chain B: A.37, D.252
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.106, A:R.107, A:R.107, A:R.107, A:R.251, A:R.251, B:D.252
GOL.5: 6 residues within 4Å:- Chain A: R.107, R.251, D.252
- Chain B: R.50, R.251
- Ligands: GOL.12
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.107, A:R.107, A:R.251, A:D.252, A:D.252, B:R.251
- Water bridges: A:D.252, B:R.50
GOL.6: 5 residues within 4Å:- Chain A: R.62, G.64, V.93, V.94, E.96
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.62, A:R.62, A:V.94, A:E.96, A:E.96
- Water bridges: A:A.65
GOL.11: 5 residues within 4Å:- Chain A: A.37, D.252
- Chain B: D.106, R.107, R.251
9 PLIP interactions:2 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:D.252, A:D.252, B:D.106, B:D.106, B:R.107, B:R.107, B:R.107, B:R.251, B:R.251
GOL.12: 6 residues within 4Å:- Chain A: R.50, R.251
- Chain B: R.107, R.251, D.252
- Ligands: GOL.5
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:R.251, B:R.107, B:R.107, B:R.251, B:D.252, B:D.252
- Water bridges: A:R.50
GOL.13: 5 residues within 4Å:- Chain B: R.62, G.64, V.93, V.94, E.96
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.62, B:R.62, B:V.94, B:E.96
- Water bridges: B:A.65
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.7: 5 residues within 4Å:- Chain A: G.123, D.127, V.295, S.296, W.299
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.296, A:S.296
- Water bridges: A:S.296
NA.14: 5 residues within 4Å:- Chain B: G.123, D.127, V.295, S.296, W.299
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.296, B:S.296
- Water bridges: B:S.296
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawashima, Y. et al., Enzymatic Synthesis of Nylon-6 Units in Organic Sol Contained Low-Water: Structural Requirement of 6-Aminohexanoate-Dimer Hydrolase for Efficient Amid Synthesis. To be Published
- Release Date
- 2010-09-01
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)
- 4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawashima, Y. et al., Enzymatic Synthesis of Nylon-6 Units in Organic Sol Contained Low-Water: Structural Requirement of 6-Aminohexanoate-Dimer Hydrolase for Efficient Amid Synthesis. To be Published
- Release Date
- 2010-09-01
- Peptides
- 6-aminohexanoate-dimer hydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A