SMTL ID : 3a6g.1

W154F mutant creatininase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.34, D.45, H.120 Ligands: ZN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.34, A:D.45, A:H.120, H2O.1, H2O.1 MN.3: 4 residues within 4Å: Chain B: E.34, D.45, H.120 Ligands: ZN.4 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.34, B:D.45, B:H.120, H2O.4, H2O.4 MN.5: 4 residues within 4Å: Chain C: E.34, D.45, H.120 Ligands: ZN.6 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.34, C:D.45, C:H.120, H2O.8, H2O.8 MN.7: 4 residues within 4Å: Chain D: E.34, D.45, H.120 Ligands: ZN.8 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.34, D:D.45, D:H.120, H2O.12, H2O.12 MN.9: 4 residues within 4Å: Chain E: E.34, D.45, H.120 Ligands: ZN.10 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.34, E:D.45, E:H.120, H2O.15, H2O.15 MN.11: 4 residues within 4Å: Chain F: E.34, D.45, H.120 Ligands: ZN.12 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.34, F:D.45, F:H.120, H2O.19, H2O.19

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.36, D.45, H.178, E.183 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.36, A:D.45, A:E.183, A:E.183, H2O.1 ZN.4: 5 residues within 4Å: Chain B: H.36, D.45, H.178, E.183 Ligands: MN.3 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.36, B:D.45, B:E.183, B:E.183, H2O.4 ZN.6: 5 residues within 4Å: Chain C: H.36, D.45, H.178, E.183 Ligands: MN.5 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.36, C:D.45, C:E.183, C:E.183, H2O.8 ZN.8: 5 residues within 4Å: Chain D: H.36, D.45, H.178, E.183 Ligands: MN.7 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.36, D:D.45, D:E.183, D:E.183, H2O.12 ZN.10: 5 residues within 4Å: Chain E: H.36, D.45, H.178, E.183 Ligands: MN.9 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.36, E:D.45, E:E.183, E:E.183, H2O.15 ZN.12: 5 residues within 4Å: Chain F: H.36, D.45, H.178, E.183 Ligands: MN.11 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.36, F:D.45, F:E.183, F:E.183, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamashita, K. et al., Substitution of Glu122 by glutamine revealed the function of the second water molecule as a proton donor in the binuclear metal enzyme creatininase. J.Mol.Biol. (2010)

Release Date

2010-02-09

Peptides

Creatinine amidohydrolase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Creatinine amidohydrolase