SMTL ID : 3a9g.1

Crystal Structure of PQQ-dependent sugar dehydrogenase apo-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 2 residues within 4Å: Chain A: R.159, D.163 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.159, A:D.163 Salt bridges: A:R.159 GLC-GLC.2: 6 residues within 4Å: Chain A: G.243, R.244, G.245, F.247, V.248, D.249 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: E.223, Y.233 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.223, A:Y.233, H2O.1, H2O.1, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakuraba, H. et al., Catalytic properties and crystal structure of quinoprotein aldose sugar dehydrogenase from hyperthermophilic archaeon Pyrobaculum aerophilum. Arch.Biochem.Biophys. (2010)

Release Date

2010-09-08

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein

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