SMTL ID : 3aak.1

Crystal structure of Zn2+-bound form of des3-20ALG-2F122A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: D.17, D.19, S.21, V.23, I.24, E.28 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.17, A:D.19, A:V.23, A:E.28, H2O.1 ZN.2: 6 residues within 4Å: Chain A: D.84, D.86, N.87, S.88, M.90, E.95 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.84, A:D.86, A:S.88, A:E.95, H2O.1 ZN.3: 2 residues within 4Å: Chain A: D.152, D.154 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.152, A:D.152, A:D.154, H2O.1 ZN.4: 6 residues within 4Å: Chain B: D.17, D.19, S.21, V.23, I.24, E.28 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.17, B:D.19, B:V.23, B:E.28, H2O.2 ZN.5: 6 residues within 4Å: Chain B: D.84, D.86, N.87, S.88, M.90, E.95 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.84, B:D.86, B:S.88, B:E.95, H2O.2 ZN.6: 2 residues within 4Å: Chain B: D.152, D.154 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.152, B:D.152, B:D.154, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Inuzuka, T. et al., Molecular basis for defect in Alix-binding by alternatively spliced isoform of ALG-2 (ALG-2DeltaGF122) and structural roles of F122 in target recognition. Bmc Struct.Biol. (2010)

Release Date

2010-09-08

Peptides

Programmed cell death protein 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Programmed cell death protein 6