SMTL ID : 3abz.1

Crystal structure of Se-Met labeled Beta-glucosidase from Kluyveromyces marxianus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: W.28, D.45, L.99, K.146, M.190, D.225, W.226, S.356 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.146, A:Y.193 Water bridges: A:R.113, A:R.113, A:S.356 GOL.2: 9 residues within 4Å: Chain A: F.55, F.56, D.57, G.58, V.437, N.438, R.439, N.441, V.442 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:F.55, A:D.57, A:G.58, A:N.438, A:R.439, A:R.439, A:R.439 Water bridges: A:N.438, A:H.443 GOL.3: 8 residues within 4Å: Chain A: K.665, G.715, Y.716, G.717, L.718, T.823, S.824, D.827 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.715, A:G.717 Water bridges: A:K.665 GOL.4: 5 residues within 4Å: Chain A: Q.137, A.184, N.185, V.187, F.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.137, A:N.185 Water bridges: A:Q.137 GOL.5: 6 residues within 4Å: Chain B: D.45, K.146, M.190, D.225, W.226, S.356 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.45, B:K.146, B:S.356 Water bridges: B:R.113, B:R.113 GOL.6: 8 residues within 4Å: Chain B: F.56, D.57, G.58, V.437, N.438, R.439, N.441, V.442 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.57, B:G.58, B:N.438, B:R.439, B:N.441 Water bridges: B:N.360 GOL.7: 8 residues within 4Å: Chain C: W.28, D.45, L.99, K.146, M.190, D.225, W.226, S.356 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.146 Water bridges: C:R.113, C:E.590 GOL.8: 8 residues within 4Å: Chain D: W.28, D.45, L.99, K.146, M.190, D.225, W.226, S.356 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:D.45, D:K.146, D:Y.193, D:D.225 Water bridges: D:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, E. et al., Role of a PA14 domain in determining substrate specificity of a glycoside hydrolase family 3 beta-glucosidase from Kluyveromyces marxianus. Biochem.J. (2010)

Release Date

2010-08-11

Peptides

Beta-glucosidase I: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Beta-glucosidase I

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