- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x 8DD: 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate(Non-covalent)
8DD.4: 13 residues within 4Å:- Chain A: W.16, R.39, R.72, A.84, G.85, L.86, E.100
- Chain B: T.33, W.34, E.35
- Ligands: MN.1, MN.2, MN.3
16 PLIP interactions:11 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:L.86
- Hydrogen bonds: A:R.39, A:R.39, A:L.86, A:E.100, B:T.33, B:E.35
- Water bridges: A:Q.70, A:A.84
- Salt bridges: A:R.72
- pi-Stacking: A:W.16, A:W.16, A:W.16, B:W.34, B:W.34, B:W.34
8DD.7: 14 residues within 4Å:- Chain A: T.33, W.34, E.35, G.123
- Chain B: W.16, R.39, R.72, A.84, G.85, L.86, E.104, E.154
- Ligands: MN.5, MN.6
19 PLIP interactions:14 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:R.39, B:R.39, B:A.84, B:L.86, B:E.104, B:E.154, B:E.154, A:T.33, A:E.35
- Water bridges: B:R.72, B:R.72, B:A.84
- Salt bridges: B:R.72
- pi-Stacking: B:W.16, B:W.16, B:W.16, A:W.34, A:W.34, A:W.34
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arimori, T. et al., Diverse substrate recognition and hydrolysis mechanisms of human NUDT5. Nucleic Acids Res. (2011)
- Release Date
- 2011-01-12
- Peptides
- ADP-sugar pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x 8DD: 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arimori, T. et al., Diverse substrate recognition and hydrolysis mechanisms of human NUDT5. Nucleic Acids Res. (2011)
- Release Date
- 2011-01-12
- Peptides
- ADP-sugar pyrophosphatase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B