SMTL ID : 3aei.2 (1 other biounit)

Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Q.10, L.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.10 SO4.2: 5 residues within 4Å: Chain A: R.48, H.65, R.68, S.69 Chain D: Y.32 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain D Water bridges: A:H.65 Salt bridges: A:R.48, A:H.65 Hydrogen bonds: D:Y.32 SO4.5: 2 residues within 4Å: Chain B: Q.10, L.91 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.10 SO4.6: 5 residues within 4Å: Chain B: R.48, H.65, R.68, S.69 Chain C: Y.32 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:Y.32 Water bridges: B:H.65 Salt bridges: B:R.48, B:H.65 SO4.9: 2 residues within 4Å: Chain C: Q.10, L.91 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.10 SO4.10: 5 residues within 4Å: Chain A: Y.32 Chain C: R.48, H.65, R.68, S.69 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Water bridges: C:H.65 Salt bridges: C:R.48, C:H.65 Hydrogen bonds: A:Y.32 SO4.13: 2 residues within 4Å: Chain D: Q.10, L.91 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.10 SO4.14: 5 residues within 4Å: Chain B: Y.32 Chain D: R.48, H.65, R.68, S.69 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:Y.32 Water bridges: D:H.65 Salt bridges: D:R.48, D:H.65

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 7 residues within 4Å: Chain A: Y.47 Chain B: Y.47 Chain C: Y.47 Chain D: Y.47 Ligands: CL.7, CL.11, CL.15 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: E.8, E.12 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain A: Y.47 Chain B: Y.47 Chain C: Y.47 Chain D: Y.47 Ligands: CL.3, CL.11, CL.15 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: E.8, E.12 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain A: Y.47 Chain B: Y.47 Chain C: Y.47 Chain D: Y.47 Ligands: CL.3, CL.7, CL.15 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain C: E.8, E.12 Ligand excluded by PLIP CL.15: 7 residues within 4Å: Chain A: Y.47 Chain B: Y.47 Chain C: Y.47 Chain D: Y.47 Ligands: CL.3, CL.7, CL.11 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain D: E.8, E.12 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sahlan, M. et al., Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin. J.Mol.Biol. (2010)

Release Date

2010-05-19

Peptides

Prefoldin beta subunit 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

Prefoldin beta subunit 2

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