SMTL ID : 3af5.1

The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: E.199, R.202, Y.229, K.230, H.234, N.644 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.199, A:Y.229, A:N.644 Salt bridges: A:R.202, A:K.230, A:H.234 SO4.2: 5 residues within 4Å: Chain A: K.116, K.117, P.118, G.119, L.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.119, A:L.120 Salt bridges: A:R.144 SO4.3: 6 residues within 4Å: Chain A: H.258, I.345, G.434, R.435, G.593 Ligands: SO4.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.435, A:G.593 Salt bridges: A:H.258, A:H.344, A:R.435 SO4.4: 2 residues within 4Å: Chain A: R.198, N.643 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.643 Salt bridges: A:R.198 SO4.5: 7 residues within 4Å: Chain A: R.336, H.352, H.354, G.358, N.361, P.384, R.385 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.385 Salt bridges: A:R.336, A:H.354, A:R.385 SO4.6: 9 residues within 4Å: Chain A: V.200, H.258, D.260, D.367, H.594, H.618 Ligands: SO4.3, ZN.11, ZN.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.260 Salt bridges: A:H.594, A:H.618

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.7: 6 residues within 4Å: Chain A: N.341, L.376, E.377, E.474, Y.475, L.476 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.376 Hydrogen bonds: A:Y.475 ACY.8: 3 residues within 4Å: Chain A: R.309, P.310, R.311 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.309 Hydrogen bonds: A:R.311 ACY.9: 3 residues within 4Å: Chain A: R.167, I.321, T.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.322 ACY.10: 4 residues within 4Å: Chain A: D.324, Y.325, E.474, Y.475 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.325

4 x ZN: ZINC ION(Non-covalent)

ZN.11: 6 residues within 4Å: Chain A: H.256, H.258, H.344, D.367 Ligands: SO4.6, ZN.14 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.256, A:H.258, A:H.344, A:D.367 ZN.12: 3 residues within 4Å: Chain A: E.387, E.612, R.651 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.387, A:E.612 ZN.13: 2 residues within 4Å: Chain A: H.498, E.505 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.498, A:E.505 ZN.14: 6 residues within 4Å: Chain A: D.260, H.261, D.367, H.618 Ligands: SO4.6, ZN.11 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.260, A:H.261, A:D.367, A:H.618

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishida, Y. et al., Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii. Proteins (2010)

Release Date

2010-04-21

Peptides

Putative uncharacterized protein PH1404: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein PH1404

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