SMTL ID : 3afp.1

Crystal structure of the single-stranded DNA binding protein from Mycobacterium leprae (Form I)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain B: F.54, L.55, R.56, V.98, V.99, E.100 Chain D: Q.85, V.99 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:R.56, D:Q.85 Water bridges: D:V.99, D:V.99 GOL.3: 8 residues within 4Å: Chain B: Q.85, V.99 Chain D: F.54, L.55, R.56, V.98, V.99, E.100 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:Q.85, D:R.56 Water bridges: B:V.99, B:V.99

2 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain B: E.62, E.65 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.62, B:E.62, B:E.65, B:E.65, H2O.7 CD.4: 2 residues within 4Å: Chain D: E.62, E.65 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.62, D:E.62, D:E.65, D:E.65, H2O.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaushal, P.S. et al., X-ray and molecular-dynamics studies on Mycobacterium leprae single-stranded DNA-binding protein and comparison with other eubacterial SSB structures. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-10-06

Peptides

Single-stranded DNA-binding protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Single-stranded DNA-binding protein

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