SMTL ID : 3ag0.1

Crystal structure of carbonmonoxy human cytoglobin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: F.51, A.58, Y.61, F.62, Q.64, H.83, R.86, V.87, A.90, L.91, V.111, A.114, H.115, H.119, V.121, Y.125, F.126, L.129 Ligands: CMO.2 30 PLIP interactions: 29 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.51, A:A.58, A:Y.61, A:Y.61, A:F.62, A:F.62, A:F.62, A:R.86, A:V.87, A:A.90, A:L.91, A:V.111, A:H.119, A:V.121, A:V.121, A:Y.125, A:F.126, A:L.129, A:L.129 Hydrogen bonds: A:Q.64 Salt bridges: A:K.82, A:H.83, A:H.119 pi-Stacking: A:H.115, A:H.115, A:H.115, A:H.119 pi-Cation interactions: A:H.115 Metal complexes: A:H.115, CMO.2

1 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.2: 5 residues within 4Å: Chain A: F.62, H.83, V.87, H.115 Ligands: HEM.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makino, M. et al., Crystal structure of the carbon monoxide complex of human cytoglobin. Proteins (2011)

Release Date

2011-02-02

Peptides

Cytoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytoglobin