SMTL ID : 3agc.1

F218V mutant of the substrate-bound red chlorophyll catabolite reductase from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x RCC: 3-{(2Z,3S,4S)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXO-1,5-DIHYDRO-2H-PYRROL-2-YLIDENE)METHYL]-2-[(5R)-2-[(3-ETHYL-5-FORMYL-4-METHYL-1H-PYRROL-2-YL)METHYL]-5-(METHOXYCARBONYL)-3-METHYL-4-OXO-4,5-DIHYDROCYCLOPENTA[B]PYRROL-6(1H)-YLIDENE]-4-METHYL-3,4-DIHYDRO-2H-PYRROL-3-YL}PROPANOIC ACID(Non-covalent)

RCC.1: 23 residues within 4Å: Chain A: L.61, I.76, S.78, I.80, I.92, S.96, V.109, E.111, I.113, I.123, P.127, Y.164, S.166, P.167, S.168, V.171, V.175, F.240, S.244, D.248, L.249, I.269, F.273 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.61, A:I.80, A:I.92, A:V.109, A:V.109, A:I.113, A:I.123, A:P.127, A:V.171, A:V.175, A:F.240, A:L.249, A:I.269, A:F.273 Hydrogen bonds: A:S.96, A:E.111, A:Y.164, A:S.166

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: L.156, L.158, V.161 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.156 NA.3: 3 residues within 4Å: Chain B: L.156, L.158, V.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugishima, M. et al., Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction. J.Mol.Biol. (2010)

Release Date

2010-09-01

Peptides

Red chlorophyll catabolite reductase, chloroplastic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Red chlorophyll catabolite reductase, chloroplastic

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