- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.2: 25 residues within 4Å:- Chain A: R.74, H.75, R.76, I.77, N.169, L.173, R.174, K.178
- Chain B: C.21, F.46, R.47, H.48, S.50, E.53, I.77, N.163, R.165
- Chain C: S.79, L.80, S.81, V.82, S.84, Y.87
- Ligands: FAD.7, UMP.9
27 PLIP interactions:12 interactions with chain B, 12 interactions with chain A, 3 interactions with chain C- Hydrophobic interactions: B:R.47
- Hydrogen bonds: B:R.47, B:R.47, B:S.50, B:S.50, B:N.163, B:R.165, B:R.165, A:R.74, A:R.74, A:R.76, A:R.76, A:R.76, A:I.77, A:N.169, A:N.169, A:R.174, C:S.79, C:V.82, C:V.82
- Water bridges: B:R.165, B:R.165, B:R.165
- Salt bridges: B:R.165, A:H.75, A:H.75, A:R.76
FAD.7: 25 residues within 4Å:- Chain A: C.21, R.47, H.48, S.50, E.53, I.77, N.163, R.165, S.166
- Chain B: R.74, H.75, R.76, I.77, N.169, L.173, R.174, K.178
- Chain D: S.79, L.80, S.81, V.82, S.84, Y.87
- Ligands: FAD.2, UMP.14
27 PLIP interactions:13 interactions with chain B, 4 interactions with chain D, 10 interactions with chain A- Hydrophobic interactions: B:K.178
- Hydrogen bonds: B:R.74, B:R.74, B:R.76, B:R.76, B:I.77, B:N.169, B:N.169, B:R.174, D:S.79, D:V.82, D:V.82, D:Y.87, A:R.47, A:S.50, A:E.53, A:N.163, A:R.165
- Water bridges: B:R.76, B:R.76, A:S.49, A:S.50, A:R.165, A:R.165
- Salt bridges: B:H.75, B:H.75, A:R.165
FAD.8: 24 residues within 4Å:- Chain A: S.79, L.80, S.81, V.82, S.84, Y.87
- Chain C: R.74, H.75, R.76, I.77, N.169, L.173, R.174, K.178
- Chain D: C.21, R.47, H.48, S.50, E.53, I.77, N.163, R.165
- Ligands: UMP.1, FAD.13
25 PLIP interactions:10 interactions with chain D, 11 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: D:R.47, D:R.47, D:S.50, D:S.50, D:E.53, D:N.163, D:R.165, C:R.74, C:R.74, C:R.76, C:R.76, C:I.77, C:N.169, C:N.169, A:S.79, A:V.82, A:V.82, A:Y.87
- Water bridges: D:R.165, D:R.165
- Salt bridges: D:R.165, C:H.75, C:H.75, C:R.76, C:R.76
FAD.13: 24 residues within 4Å:- Chain B: S.79, L.80, S.81, V.82, S.84, Y.87
- Chain C: C.21, R.47, H.48, S.50, E.53, I.77, N.163, R.165
- Chain D: R.74, H.75, R.76, I.77, N.169, L.173, R.174, K.178
- Ligands: UMP.6, FAD.8
19 PLIP interactions:7 interactions with chain C, 3 interactions with chain B, 9 interactions with chain D- Hydrogen bonds: C:R.47, C:R.47, C:S.50, C:S.50, C:N.163, C:R.165, B:S.79, B:V.82, B:V.82, D:R.74, D:R.74, D:R.76, D:R.76, D:R.76, D:I.77, D:N.169, D:N.169
- Salt bridges: C:R.165, D:R.76
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 2 residues within 4Å:- Chain A: P.195, G.196
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.196
SO4.4: 6 residues within 4Å:- Chain A: H.211, H.213, H.214
- Chain B: I.45, F.46, R.47
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain B- Water bridges: A:H.213, A:H.213, B:R.47
- Salt bridges: A:H.213, A:H.214
- Hydrogen bonds: B:N.44, B:F.46, B:R.47
SO4.5: 3 residues within 4Å:- Chain A: N.44, I.45, F.46
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.46
- Water bridges: A:R.47
SO4.10: 2 residues within 4Å:- Chain C: P.195, G.196
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:G.196
SO4.11: 5 residues within 4Å:- Chain C: Y.8, P.10, L.11, E.197, H.198
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:L.11
- Water bridges: C:D.12
- Salt bridges: C:K.36, C:H.198
SO4.12: 3 residues within 4Å:- Chain C: S.176, N.177, K.178
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.177, C:N.177, C:N.177
SO4.15: 2 residues within 4Å:- Chain D: P.100, L.101
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:L.101
SO4.16: 2 residues within 4Å:- Chain D: P.195, G.196
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:G.196
- Water bridges: D:E.197
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., Crystal structure and functional analysis of a flavin dependent thymidylate synthase from helicobacter pylori. To be Published
- Release Date
- 2011-04-20
- Peptides
- Thymidylate synthase thyX: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, X. et al., Crystal structure and functional analysis of a flavin dependent thymidylate synthase from helicobacter pylori. To be Published
- Release Date
- 2011-04-20
- Peptides
- Thymidylate synthase thyX: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D