SMTL ID : 3ai2.1 (1 other biounit)

The crystal structure of L-sorbose reductase from Gluconobacter frateurii complexed with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 30 residues within 4Å: Chain A: G.14, S.15, S.16, S.17, G.18, I.19, A.38, R.39, Q.40, R.43, V.64, D.65, V.66, N.92, A.93, G.94, L.115, N.142, A.143, S.144, Y.157, K.161, P.187, G.188, L.189, I.190, T.192, P.193, D.194, W.195 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:I.19, A:P.187 Hydrogen bonds: A:S.16, A:S.16, A:S.16, A:S.17, A:S.17, A:I.19, A:R.39, A:Q.40, A:D.65, A:D.65, A:V.66, A:N.92, A:N.92, A:N.142, A:Y.157, A:K.161, A:I.190, A:T.192 Water bridges: A:G.20, A:R.39, A:R.43, A:R.43, A:R.43, A:T.192, A:D.194 Salt bridges: A:R.39, A:R.43 pi-Cation interactions: A:R.39 NDP.2: 29 residues within 4Å: Chain B: G.14, S.15, S.16, S.17, G.18, I.19, A.38, R.39, Q.40, R.43, V.64, D.65, V.66, N.92, A.93, G.94, L.115, N.142, A.143, S.144, Y.157, K.161, P.187, G.188, L.189, I.190, T.192, P.193, W.195 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:P.187 Hydrogen bonds: B:S.16, B:S.17, B:S.17, B:I.19, B:R.39, B:Q.40, B:D.65, B:D.65, B:V.66, B:A.67, B:N.92, B:N.142, B:Y.157, B:K.161, B:I.190, B:T.192, B:T.192 Water bridges: B:S.16, B:G.20, B:R.39, B:R.43, B:R.43, B:R.43, B:N.92, B:T.192 Salt bridges: B:R.39, B:R.43 NDP.3: 27 residues within 4Å: Chain C: G.14, S.15, S.16, S.17, G.18, I.19, A.38, R.39, Q.40, V.64, D.65, V.66, N.92, A.93, G.94, L.115, N.142, A.143, S.144, Y.157, K.161, P.187, G.188, L.189, I.190, T.192, W.195 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:I.19, C:P.187 Hydrogen bonds: C:S.16, C:S.16, C:S.17, C:S.17, C:I.19, C:R.39, C:Q.40, C:D.65, C:V.66, C:N.92, C:N.142, C:K.161, C:I.190, C:T.192, C:T.192, C:T.192 Water bridges: C:G.20, C:N.92, C:T.95 Salt bridges: C:R.39 NDP.4: 28 residues within 4Å: Chain D: G.14, S.15, S.16, S.17, G.18, I.19, A.38, R.39, Q.40, R.43, V.64, D.65, V.66, A.67, N.92, A.93, G.94, L.115, N.142, A.143, S.144, Y.157, K.161, P.187, G.188, I.190, T.192, W.195 30 PLIP interactions: 30 interactions with chain D Hydrophobic interactions: D:I.19, D:P.187 Hydrogen bonds: D:S.16, D:S.16, D:S.17, D:S.17, D:I.19, D:R.39, D:R.39, D:Q.40, D:Q.40, D:D.65, D:V.66, D:A.67, D:N.92, D:N.142, D:K.161, D:I.190, D:T.192, D:T.192, D:T.192 Water bridges: D:G.20, D:R.39, D:R.39, D:R.43, D:N.92, D:T.95 Salt bridges: D:R.39, D:R.43 pi-Cation interactions: D:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kubota, K. et al., The Crystal Structure of l-Sorbose Reductase from Gluconobacter frateurii Complexed with NADPH and l-Sorbose. J.Mol.Biol. (2011)

Release Date

2011-02-09

Peptides

NADPH-sorbose reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
C

NADPH-sorbose reductase

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