SMTL ID : 3ai9.1

Crystal structure of DUF358 protein reveals a putative SPOUT-class rRNA methyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: L.142, H.143, M.144, I.161, G.162, D.163, H.164, I.183, S.184, L.185, S.186, L.188, E.189, L.190, A.192, C.195 Chain B: S.49 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.162, A:D.163, A:L.185, A:S.186, A:S.186, A:L.190 SAM.4: 17 residues within 4Å: Chain A: S.49 Chain B: L.142, H.143, M.144, I.161, G.162, D.163, H.164, I.183, S.184, L.185, S.186, L.188, E.189, L.190, A.192, C.195 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.162, B:D.163, B:L.185, B:S.186, B:S.186, B:L.190

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: S.6, R.207 No protein-ligand interaction detected (PLIP) MG.3: 5 residues within 4Å: Chain A: Y.59, K.73, W.111, E.131, E.135 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: S.6, R.207 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain B: Y.59, K.73, W.111, E.131, E.135 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H.Y. et al., Crystal structure of Mj1640/DUF358 protein reveals a putative SPOUT-class RNA methyltransferase. J Mol Cell Biol (2010)

Release Date

2011-03-30

Peptides

UPF0217 protein MJ1640: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
X

UPF0217 protein MJ1640