SMTL ID : 3aig.1

ADAMALYSIN II WITH PEPTIDOMIMETIC INHIBITOR POL656

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.142, H.146, H.152 Ligands: 0ZC.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:H.146, A:H.152 ZN.5: 4 residues within 4Å: Chain B: H.142, H.146, H.152 Ligands: 0ZC.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.142, B:H.146, B:H.152

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.9, D.93, C.197, N.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.9, A:D.93, A:D.93, A:C.197, H2O.1 CA.6: 4 residues within 4Å: Chain B: E.9, D.93, C.197, N.200 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.9, B:D.93, B:D.93, B:C.197, H2O.6

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: P.4, R.6, L.199 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.6 SO4.7: 3 residues within 4Å: Chain B: P.4, R.6, L.199 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.6

2 x 0ZC: (3R)-2-[N-(furan-2-ylcarbonyl)-L-leucyl]-2,3,4,9-tetrahydro-1H-beta-carboline-3-carboxylic acid(Non-covalent)

0ZC.4: 17 residues within 4Å: Chain A: G.105, K.106, I.107, I.108, G.109, V.138, T.139, H.142, E.143, H.146, H.152, I.165, R.167, P.168, G.169, L.170 Ligands: ZN.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.107, A:V.138, A:T.139, A:H.142, A:L.170, A:L.170 Hydrogen bonds: A:K.106, A:I.108, A:G.109, A:E.143, A:R.167, A:L.170 Salt bridges: A:H.142, A:H.146, A:H.152 pi-Stacking: A:H.142, A:H.142 0ZC.8: 17 residues within 4Å: Chain B: G.105, K.106, I.107, I.108, G.109, V.138, T.139, H.142, E.143, H.146, H.152, I.165, R.167, P.168, G.169, L.170 Ligands: ZN.5 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.107, B:V.138, B:T.139, B:H.142, B:L.170, B:L.170 Hydrogen bonds: B:K.106, B:I.108, B:G.109, B:E.143, B:R.167, B:L.170 Salt bridges: B:H.142, B:H.146, B:H.152 pi-Stacking: B:H.142, B:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomis-Ruth, F.X. et al., Structures of adamalysin II with peptidic inhibitors. Implications for the design of tumor necrosis factor alpha convertase inhibitors. Protein Sci. (1998)

Release Date

1998-04-15

Peptides

ADAMALYSIN II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ADAMALYSIN II