SMTL ID : 3aii.1

Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 7 residues within 4Å: Chain A: A.124, G.129, L.131, E.161, W.162, D.163 Ligands: CA.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.124, A:L.131 Hydrogen bonds: A:D.163

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: A.153, D.154, W.157, R.356, A.359 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.154, A:D.154 Water bridges: A:R.356

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.191, C.193, C.208, C.210 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.191, A:C.193, A:C.208, A:C.210

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 2 residues within 4Å: Chain A: G.129 Ligands: ACY.1 5 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:G.129, H2O.1, H2O.1, H2O.15, ACY.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nureki, O. et al., Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation. Nucleic Acids Res. (2010)

Release Date

2010-08-04

Peptides

Glutamyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamyl-tRNA synthetase