SMTL ID : 3aje.1

Crystal structure of S. tokodaii Sua5 complexed with L-threonine and AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x THR: THREONINE(Non-covalent)

THR.1: 13 residues within 4Å: Chain A: T.34, T.36, V.37, Y.38, G.39, I.66, H.68, R.122, A.142, E.181, S.182, R.196 Ligands: ANP.2 9 PLIP interactions: 8 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:T.36, A:T.36, A:R.122, A:R.122, A:A.142, A:S.182, T.1 Salt bridges: A:R.122, A:R.196

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 19 residues within 4Å: Chain A: R.59, N.63, P.64, I.66, V.101, L.116, T.118, V.119, A.120, A.142, P.143, S.144, S.152, E.181, I.184, L.195, R.196, Y.237 Ligands: THR.1 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:R.59, A:R.59, A:N.63, A:I.66, A:T.118, A:T.118, A:S.144, A:S.144, A:S.152, A:E.181, A:E.181, A:R.196, A:Y.237, A:Y.237, T.1 Water bridges: A:N.63, A:N.63, A:A.120 Salt bridges: A:R.196

6 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 6 residues within 4Å: Chain A: R.249, N.250, I.251, F.252, K.253, D.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.253, A:D.254, A:D.254 Water bridges: A:E.276 NO3.4: 4 residues within 4Å: Chain A: S.260, Y.263, K.264, V.265 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.265, A:V.265 Water bridges: A:S.260, A:S.260, A:Y.263 NO3.5: 1 residues within 4Å: Chain A: R.25 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.25, A:R.25 NO3.6: 3 residues within 4Å: Chain A: N.58, P.60, A.148 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.58 Water bridges: A:A.148 NO3.7: 1 residues within 4Å: Chain A: R.321 No protein-ligand interaction detected (PLIP) NO3.8: 3 residues within 4Å: Chain A: I.5, K.6, K.16 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.16 Water bridges: A:K.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuratani, M. et al., Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP. Proteins (2011)

Release Date

2011-04-13

Peptides

Putative uncharacterized protein ST1526: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein ST1526

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