SMTL ID : 3al6.2 (1 other biounit)

Crystal structure of Human TYW5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.183, D.185, H.258 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.183, A:D.185, A:H.258 NI.2: 4 residues within 4Å: Chain B: H.183, D.185, H.258 Ligands: AKG.3 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.183, B:D.185, B:H.258

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.3: 13 residues within 4Å: Chain B: Y.129, R.172, L.180, H.183, D.185, N.189, L.191, K.198, H.258, V.260, N.270, F.272 Ligands: NI.2 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.180, B:V.260 Hydrogen bonds: B:Y.129, B:N.189 Salt bridges: B:R.172, B:R.172, B:K.198, B:H.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kato, M. et al., Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification. Nucleic Acids Res. (2011)

Release Date

2010-12-01

Peptides

JmjC domain-containing protein C2orf60: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

JmjC domain-containing protein C2orf60

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