SMTL ID : 3am2.1

Clostridium perfringens enterotoxin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-trimer

Ligands

9 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 8 residues within 4Å: Chain A: E.110 Chain B: E.110 Chain C: E.110 Ligands: UNX.3, UNX.5, UNX.7, UNX.9, UNX.11 No protein-ligand interaction detected (PLIP) UNX.2: 5 residues within 4Å: Chain A: E.94 Chain B: E.94 Chain C: E.94 Ligands: UNX.6, UNX.10 No protein-ligand interaction detected (PLIP) UNX.3: 8 residues within 4Å: Chain A: E.94 Chain B: E.94 Chain C: E.94 Ligands: UNX.1, UNX.5, UNX.7, UNX.9, UNX.11 No protein-ligand interaction detected (PLIP) UNX.5: 8 residues within 4Å: Chain A: E.110 Chain B: E.110 Chain C: E.110 Ligands: UNX.1, UNX.3, UNX.7, UNX.9, UNX.11 No protein-ligand interaction detected (PLIP) UNX.6: 5 residues within 4Å: Chain A: E.94 Chain B: E.94 Chain C: E.94 Ligands: UNX.2, UNX.10 No protein-ligand interaction detected (PLIP) UNX.7: 8 residues within 4Å: Chain A: E.94 Chain B: E.94 Chain C: E.94 Ligands: UNX.1, UNX.3, UNX.5, UNX.9, UNX.11 No protein-ligand interaction detected (PLIP) UNX.9: 8 residues within 4Å: Chain A: E.110 Chain B: E.110 Chain C: E.110 Ligands: UNX.1, UNX.3, UNX.5, UNX.7, UNX.11 No protein-ligand interaction detected (PLIP) UNX.10: 5 residues within 4Å: Chain A: E.94 Chain B: E.94 Chain C: E.94 Ligands: UNX.2, UNX.6 No protein-ligand interaction detected (PLIP) UNX.11: 8 residues within 4Å: Chain A: E.94 Chain B: E.94 Chain C: E.94 Ligands: UNX.1, UNX.3, UNX.5, UNX.7, UNX.9 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 11 residues within 4Å: Chain A: D.39, G.40, L.41, E.198, I.199, L.200, D.201, K.237, N.239, Y.264, V.299 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.41, A:D.201, A:N.239, A:N.239, A:Y.264 GOL.8: 11 residues within 4Å: Chain B: D.39, G.40, L.41, E.198, I.199, L.200, D.201, K.237, N.239, Y.264, V.299 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.41, B:D.201, B:N.239, B:N.239, B:Y.264 GOL.12: 11 residues within 4Å: Chain C: D.39, G.40, L.41, E.198, I.199, L.200, D.201, K.237, N.239, Y.264, V.299 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.41, C:E.198, C:D.201, C:N.239, C:N.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitadokoro, K. et al., Crystal Structure of Clostridium perfringens Enterotoxin Displays Features of {beta}-Pore-forming Toxins. J.Biol.Chem. (2011)

Release Date

2011-04-13

Peptides

Heat-labile enterotoxin B chain: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Heat-labile enterotoxin B chain