SMTL ID : 3amk.1

Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.38, H.385, K.389 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.385, A:K.389 Salt bridges: A:K.38, A:H.385, A:K.389 PO4.2: 5 residues within 4Å: Chain A: K.171, H.172, D.258, K.259, S.262 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.262, A:S.262 Salt bridges: A:K.171, A:H.172

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.174, R.330, M.333, D.334, L.390 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.174, A:R.174, A:R.330, A:M.333, A:D.334, A:D.334 GOL.4: 6 residues within 4Å: Chain A: H.306, L.308, W.309, S.348, H.354, I.356 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.348 Water bridges: A:T.347, A:T.347, A:S.348 GOL.5: 6 residues within 4Å: Chain A: F.360, T.361, G.362, Y.367, V.401, S.402 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.361, A:Y.367, A:Y.367, A:V.401 GOL.6: 5 residues within 4Å: Chain A: D.439, P.498, R.502, P.616, R.685 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.439, A:P.498, A:R.685, A:R.685 Water bridges: A:D.439, A:D.439, A:R.502 GOL.7: 5 residues within 4Å: Chain A: L.434, K.435, N.436, K.437, E.438 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.437 Water bridges: A:D.439 GOL.8: 4 residues within 4Å: Chain A: K.565, N.568, A.569, Q.572 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.565, A:N.568, A:Q.572

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noguchi, J. et al., Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding. Glycobiology (2011)

Release Date

2011-09-28

Peptides

Os06g0726400 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Os06g0726400 protein