SMTL ID : 3amu.1

Crystal structure of the TiaS-tRNA(Ile2)-AMPCPP-agmatine complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 17 residues within 4Å: Chain A: D.28, D.29, D.31, T.38, L.65, I.69, N.76, G.77, A.132, D.135, V.136, L.137, R.160, G.161, I.163, G.164 Chain B: C.36 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.28, A:D.29, A:N.76, A:G.77, A:G.77, A:A.132, A:L.137, A:G.161, A:I.163, A:G.164

1 x AG2: AGMATINE(Non-covalent)

AG2.2: 12 residues within 4Å: Chain A: E.179, D.213, N.214, V.223, C.224, G.235, R.237, P.418, S.419, R.421 Chain B: U.35, A.37 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.223 Hydrogen bonds: A:N.214, A:G.235 Salt bridges: A:E.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osawa, T. et al., Structural basis of tRNA agmatinylation essential for AUA codon decoding. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-10-19

Peptides

Putative uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative uncharacterized protein

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