SMTL ID : 3ano.1

Crystal Structure of a Novel Diadenosine 5',5'''-P1,P4-Tetraphosphate Phosphorylase from Mycobacterium tuberculosis H37Rv

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-tetramer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: N.154, G.160, G.161, S.162, L.163, A.164, H.168, H.170 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.154, A:S.162, A:S.162, A:L.163, A:L.163 Water bridges: A:N.154, A:N.154, A:N.154, A:H.168 Salt bridges: A:H.168, A:H.170 PO4.3: 6 residues within 4Å: Chain B: N.154, G.160, L.163, H.168, H.170 Chain C: Q.38 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.154, B:G.160, C:Q.38 Water bridges: B:N.154, B:N.154, B:H.170 Salt bridges: B:H.168, B:H.170 PO4.4: 5 residues within 4Å: Chain B: F.132, K.135, W.206, K.211, L.212 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.212 Water bridges: B:K.135, B:K.211 Salt bridges: B:K.135, B:K.211 PO4.6: 8 residues within 4Å: Chain C: N.154, G.160, G.161, S.162, L.163, A.164, H.168, H.170 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:N.154, C:S.162, C:S.162, C:L.163, C:L.163 Water bridges: C:N.154, C:N.154, C:N.154, C:H.168 Salt bridges: C:H.168, C:H.170 PO4.8: 6 residues within 4Å: Chain A: Q.38 Chain D: N.154, G.160, L.163, H.168, H.170 8 PLIP interactions: 1 interactions with chain A, 7 interactions with chain D Hydrogen bonds: A:Q.38, D:N.154, D:G.160 Water bridges: D:N.154, D:N.154, D:H.170 Salt bridges: D:H.168, D:H.170 PO4.9: 5 residues within 4Å: Chain D: F.132, K.135, W.206, K.211, L.212 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:L.212 Water bridges: D:K.135, D:K.211 Salt bridges: D:K.135, D:K.211

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 8 residues within 4Å: Chain A: I.76, L.79, E.83, G.84, L.85, V.96, L.97, M.108 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.75 PG4.5: 6 residues within 4Å: Chain B: P.104, W.175, G.176, G.177, P.192, Q.193 No protein-ligand interaction detected (PLIP) PG4.7: 8 residues within 4Å: Chain C: I.76, L.79, E.83, G.84, L.85, V.96, L.97, M.108 1 PLIP interactions: 1 interactions with chain C Water bridges: C:E.75 PG4.10: 6 residues within 4Å: Chain D: P.104, W.175, G.176, G.177, P.192, Q.193 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mori, S. et al., Structural insights into the novel diadenosine 5',5-P1,P4-tetraphosphate phosphorylase from Mycobacterium tuberculosis H37Rv. J.Mol.Biol. (2011)

Release Date

2011-05-18

Peptides

AP-4-A phosphorylase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

AP-4-A phosphorylase