- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x BMC: 3-(1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazole-5-carboxylic acid(Non-covalent)
BMC.4: 12 residues within 4Å:- Chain A: Y.34, H.136, R.138, S.146, G.148, E.149, V.152
- Chain B: R.58, W.59, P.60, K.62, I.155
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:E.149, B:P.60, B:P.60, B:I.155
- Hydrogen bonds: A:S.146
- pi-Cation interactions: A:H.136
- Salt bridges: B:K.62
BMC.11: 12 residues within 4Å:- Chain A: R.58, W.59, P.60
- Chain B: Y.34, W.59, N.135, H.136, R.138, S.146, G.148, E.149, V.152
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.138, B:S.146
- Water bridges: B:H.136
- pi-Stacking: B:H.136
- pi-Cation interactions: B:H.136
- Hydrophobic interactions: A:P.60
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: C.16, T.17, H.18, K.110
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:C.16, A:H.18, A:H.18
- Salt bridges: A:K.110
SO4.6: 4 residues within 4Å:- Chain A: K.22, R.117, H.122, L.123
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.117, A:L.123
- Water bridges: A:K.22, A:K.124
- Salt bridges: A:K.22, A:H.122
SO4.7: 3 residues within 4Å:- Chain A: G.74, A.75, T.76
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:A.75, A:T.76, A:T.76
- Water bridges: A:G.74, A:G.74, A:V.77
SO4.12: 4 residues within 4Å:- Chain B: K.22, R.117, H.122, L.123
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.117, B:L.123
- Water bridges: B:K.124
- Salt bridges: B:K.22, B:H.122
SO4.13: 4 residues within 4Å:- Chain B: C.16, T.17, H.18, K.110
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:C.16, B:T.17, B:H.18
- Salt bridges: B:K.110
SO4.14: 3 residues within 4Å:- Chain B: G.74, A.75, T.76
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.75, B:T.76, B:T.76
- Water bridges: B:G.74, B:V.77
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wielens, J. et al., Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1. Chemmedchem (2011)
- Release Date
- 2011-03-09
- Peptides
- POL polyprotein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CD: CADMIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x BMC: 3-(1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazole-5-carboxylic acid(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wielens, J. et al., Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1. Chemmedchem (2011)
- Release Date
- 2011-03-09
- Peptides
- POL polyprotein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B